Changeset [60dc278df326933275cb7859b53c33bf6596ef09] by Mark Fiers

February 8th, 2012 @ 08:39 AM

Merge branch 'moa.0.10' of ssh.github.com:mfiers/Moa into moa.0.10

  • 'moa.0.10' of ssh.github.com:mfiers/Moa: moa lock is overridable using -f uses a ref directory now moa lock works again renamed variables - made them more consistent move p p to _project project changed sort order for moa show of the output keys (ignore trailing ) changed tagline version to 0.10.15 updated docs updated docs works again allow specific execution of one plugin added metavar to plugin load list Defined pref next first last metavars changed p back to p :) changed p to _p as the variable containing the project directory - in this way it does not contaminate the xxx namespace metavars uses for parent directories meta variables are now defined in this separate plugin Moved metavars to a separate plugin reverted to gitpython - added history & bash_histroy to moaFiles https://github.com/mfiers/Moa/commit/60dc278df326933275cb7859b53c33...

Committed by Mark Fiers

  • A lib/python/moa/plugin/metavar/__init__.py
  • A sphinx/api/plugin/checkversion.rst
  • A sphinx/api/plugin/doc.rst
  • A sphinx/api/plugin/mail.rst
  • A sphinx/api/plugin/metavar.rst
  • A sphinx/api/plugin/project.rst
  • A sphinx/api/plugin/report.rst
  • A sphinx/api/plugin/sgeActor.rst
  • A sphinx/api/plugin/umask.rst
  • A sphinx/api/plugin/varInject.rst
  • A sphinx/templates/map2.rst
  • A sphinx/templates/map22.rst
  • M Changelog.txt
  • M VERSION
  • M bin/moa
  • M etc/config
  • M lib/python/moa/job.py
  • M lib/python/moa/jobConf.py
  • M lib/python/moa/plugin/__init__.py
  • M lib/python/moa/plugin/configure/__init__.py
  • M lib/python/moa/plugin/moaGit/__init__.py
  • M lib/python/moa/plugin/project/__init__.py
  • M setup.py
  • M sphinx/api/plugin/index.rst
  • M sphinx/api/plugin/refresh_plugins
  • M sphinx/commands/index.rst
  • M template2/sync.run.py
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lightweight workflows for bioinformatics

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