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Changeset [916e937448be8597525233f55a823e7e77c98de8] by Mark Fiers

Revision 916e937448be8597525233f55a823e7e77c98de8, committed by Mark Fiers · May 21st, 2012 @ 11:43 PM

124 changed files

• A bin/moar
• A lib/python/moa/plugin/system/smw/__init__.py
• A lib/python/moa/plugin/system/smw/templates/changemessage.jinja2
• A lib/python/moa/plugin/system/smw/templates/default/Category:Moa.smw
• A lib/python/moa/plugin/system/smw/templates/default/Category:MoaChangeMessage.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaChangeMessage.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaCommandLine.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaHost.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaJobId.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaJobTitle.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaPath.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaProject.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:MoaSmwJobId.smw
• A lib/python/moa/plugin/system/smw/templates/default/Property:Modification\ date.smw"
• A lib/python/moa/plugin/system/smw/templates/default/Property:Modification_date.smw
• A lib/python/moa/plugin/system/smw/templates/job/default.jinja2
• A lib/python/moa/plugin/system/smw/templates/job/project.jinja2
• R lib/gnumake/__core.mk
• R lib/gnumake/__prepare.mk
• R lib/gnumake/core.mk
• R lib/gnumake/execute.mk
• R lib/gnumake/getPluginList.mk
• R lib/gnumake/plugins/adhoc.mk
• R lib/gnumake/plugins/fileset.mk
• R lib/gnumake/plugins/info.mk
• R lib/gnumake/plugins/pack.mk
• R lib/gnumake/plugins/state.mk
• R lib/gnumake/plugins/test.mk
• R lib/gnumake/prepare.mk
• R lib/gnumake/util/__gmsl
• R lib/gnumake/util/gmsl
• R sphinx/templates/abyss_pe.rst
• R sphinx/templates/abyss_se.rst
• R sphinx/templates/adhoc.rst
• R sphinx/templates/bamextract.rst
• R sphinx/templates/bartab.rst
• R sphinx/templates/bdbb.rst
• R sphinx/templates/bfast_aln.rst
• R sphinx/templates/bfast_db.rst
• R sphinx/templates/blast.rst
• R sphinx/templates/blastdb.rst
• R sphinx/templates/blat.rst
• R sphinx/templates/bowtie.rst
• R sphinx/templates/bowtie_pe.rst
• R sphinx/templates/bowtie_se.rst
• R sphinx/templates/bowtiedb.rst
• R sphinx/templates/bwa_aln.rst
• R sphinx/templates/bwa_index.rst
• R sphinx/templates/bwa_sampe.rst
• R sphinx/templates/bwa_samse.rst
• R sphinx/templates/cdsmatrix.rst
• R sphinx/templates/cleanFasta.rst
• R sphinx/templates/clustalgroup.rst
• R sphinx/templates/clustalpair.rst
• R sphinx/templates/clustalw.rst
• R sphinx/templates/concatenate.rst
• R sphinx/templates/dottup.rst
• R sphinx/templates/empty.rst
• R sphinx/templates/fasta2gff.rst
• R sphinx/templates/fastainfo.rst
• R sphinx/templates/fastqc.rst
• R sphinx/templates/fastx_clipper.rst
• R sphinx/templates/fastx_qual_stats.rst
• R sphinx/templates/gather.rst
• R sphinx/templates/genemarks.rst
• R sphinx/templates/getorf.rst
• R sphinx/templates/glimmer3.rst
• R sphinx/templates/gmap.rst
• R sphinx/templates/gmapdb.rst
• R sphinx/templates/gsMapper.rst
• R sphinx/templates/h_blast.rst
• R sphinx/templates/hagfish.rst
• R sphinx/templates/index.rst
• R sphinx/templates/kanga.rst
• R sphinx/templates/kangar_pe.rst
• R sphinx/templates/kangar_se.rst
• R sphinx/templates/kangax.rst
• R sphinx/templates/lftp.rst
• R sphinx/templates/map.rst
• R sphinx/templates/map2.rst
• R sphinx/templates/map22.rst
• R sphinx/templates/maq_fasta2bfa.rst
• R sphinx/templates/maq_fastq2bfq.rst
• R sphinx/templates/maq_match_pair.rst
• R sphinx/templates/maq_pe.rst
• R sphinx/templates/maq_se.rst
• R sphinx/templates/moatest.rst
• R sphinx/templates/mummer.rst
• R sphinx/templates/ncbi.rst
• R sphinx/templates/newbler.rst
• R sphinx/templates/newjobtest.rst
• R sphinx/templates/nstretch.rst
• R sphinx/templates/orthomcl.rst
• R sphinx/templates/pregap.rst
• R sphinx/templates/project.rst
• R sphinx/templates/reduce.rst
• R sphinx/templates/sam2bam.rst
• R sphinx/templates/samtools_pileup.rst
• R sphinx/templates/sffinfo.rst
• R sphinx/templates/simple.rst
• R sphinx/templates/soapdenovo_pe.rst
• R sphinx/templates/statsidx.rst
• R sphinx/templates/sync.rst
• R sphinx/templates/unittest.rst
• R sphinx/templates/varscan.rst
• R sphinx/templates/vpcr.rst
• R sphinx/templates/vpcr_list.rst
• R sphinx/templates/wget.rst
• M etc/config
• M lib/jinja2/command.snippet.rst.jinja2
• M lib/python/moa/args.py
• M lib/python/moa/jobConf.py
• M lib/python/moa/plugin/__init__.py
• M lib/python/moa/plugin/system/configure.py
• M lib/python/moa/plugin/system/doc.py
• M lib/python/moa/plugin/system/fileset.py
• M lib/python/moa/plugin/system/moaGit.py
• M lib/python/moa/plugin/system/status.py
• M sphinx/commands/index.rst
• M sphinx/commands/update_commands
• M sphinx/install.rst
• M template2/bowtie_pe.jinja2
• M template2/bowtie_pe.moa
• M template2/sync.run.py