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Changeset [9dd15f5f1d9d251f9b7fe0fca07fe6401f9745f4] by Mark Fiers

Revision 9dd15f5f1d9d251f9b7fe0fca07fe6401f9745f4, committed by Mark Fiers · October 17th, 2012 @ 03:24 AM

227 changed files

  • A lib/python/moa/template/local_templates/abyss_pe.jinja2
  • A lib/python/moa/template/local_templates/abyss_pe.moa
  • A lib/python/moa/template/local_templates/abyss_se.jinja2
  • A lib/python/moa/template/local_templates/abyss_se.moa
  • A lib/python/moa/template/local_templates/archroot.jinja2
  • A lib/python/moa/template/local_templates/archroot.moa
  • A lib/python/moa/template/local_templates/bamextract.jinja2
  • A lib/python/moa/template/local_templates/bamextract.moa
  • A lib/python/moa/template/local_templates/bdbb.jinja2
  • A lib/python/moa/template/local_templates/bdbb.moa
  • A lib/python/moa/template/local_templates/bfast_aln.jinja2
  • A lib/python/moa/template/local_templates/bfast_aln.moa
  • A lib/python/moa/template/local_templates/bfast_db.jinja2
  • A lib/python/moa/template/local_templates/bfast_db.moa
  • A lib/python/moa/template/local_templates/blast.jinja2
  • A lib/python/moa/template/local_templates/blast.moa
  • A lib/python/moa/template/local_templates/blastdb.jinja2
  • A lib/python/moa/template/local_templates/blastdb.moa
  • A lib/python/moa/template/local_templates/bowtie.jinja2
  • A lib/python/moa/template/local_templates/bowtie.moa
  • A lib/python/moa/template/local_templates/bowtie_pe.finish.jinja2
  • A lib/python/moa/template/local_templates/bowtie_pe.jinja2
  • A lib/python/moa/template/local_templates/bowtie_pe.moa
  • A lib/python/moa/template/local_templates/bowtie_se.jinja2
  • A lib/python/moa/template/local_templates/bowtie_se.moa
  • A lib/python/moa/template/local_templates/bowtiedb.jinja2
  • A lib/python/moa/template/local_templates/bowtiedb.moa
  • A lib/python/moa/template/local_templates/bwa_aln.jinja2
  • A lib/python/moa/template/local_templates/bwa_aln.moa
  • A lib/python/moa/template/local_templates/bwa_index.jinja2
  • A lib/python/moa/template/local_templates/bwa_index.moa
  • A lib/python/moa/template/local_templates/bwa_sampe.jinja2
  • A lib/python/moa/template/local_templates/bwa_sampe.moa
  • A lib/python/moa/template/local_templates/bwa_samse.jinja2
  • A lib/python/moa/template/local_templates/bwa_samse.moa
  • A lib/python/moa/template/local_templates/cdsmatrix.jinja2
  • A lib/python/moa/template/local_templates/cdsmatrix.moa
  • A lib/python/moa/template/local_templates/empty.jinja2
  • A lib/python/moa/template/local_templates/empty.moa
  • A lib/python/moa/template/local_templates/fastainfo.finish.py
  • A lib/python/moa/template/local_templates/fastainfo.moa
  • A lib/python/moa/template/local_templates/fastainfo.run.py
  • A lib/python/moa/template/local_templates/fastqc.jinja2
  • A lib/python/moa/template/local_templates/fastqc.moa
  • A lib/python/moa/template/local_templates/fastx_clipper.jinja2
  • A lib/python/moa/template/local_templates/fastx_clipper.moa
  • A lib/python/moa/template/local_templates/fastx_qual_stats.jinja2
  • A lib/python/moa/template/local_templates/fastx_qual_stats.moa
  • A lib/python/moa/template/local_templates/filterwgs_pair.jinja2
  • A lib/python/moa/template/local_templates/filterwgs_pair.moa
  • A lib/python/moa/template/local_templates/genemarks.jinja2
  • A lib/python/moa/template/local_templates/genemarks.moa
  • A lib/python/moa/template/local_templates/glimmer3.jinja2
  • A lib/python/moa/template/local_templates/glimmer3.moa
  • A lib/python/moa/template/local_templates/gmap.jinja2
  • A lib/python/moa/template/local_templates/gmap.moa
  • A lib/python/moa/template/local_templates/gmapdb.jinja2
  • A lib/python/moa/template/local_templates/gmapdb.moa
  • A lib/python/moa/template/local_templates/gsMapper.jinja2
  • A lib/python/moa/template/local_templates/hagfish.jinja2
  • A lib/python/moa/template/local_templates/hagfish.moa
  • A lib/python/moa/template/local_templates/kanga.jinja2
  • A lib/python/moa/template/local_templates/kanga.moa
  • A lib/python/moa/template/local_templates/kangar_pe.jinja2
  • A lib/python/moa/template/local_templates/kangar_pe.moa
  • A lib/python/moa/template/local_templates/kangar_se.jinja2
  • A lib/python/moa/template/local_templates/kangar_se.moa
  • A lib/python/moa/template/local_templates/kangax.jinja2
  • A lib/python/moa/template/local_templates/kangax.moa
  • A lib/python/moa/template/local_templates/map.jinja2
  • A lib/python/moa/template/local_templates/map.moa
  • A lib/python/moa/template/local_templates/map2.jinja2
  • A lib/python/moa/template/local_templates/map2.moa
  • A lib/python/moa/template/local_templates/map22.jinja2
  • A lib/python/moa/template/local_templates/map22.moa
  • A lib/python/moa/template/local_templates/maq_pe.jinja2
  • A lib/python/moa/template/local_templates/maq_pe.moa
  • A lib/python/moa/template/local_templates/maq_se.jinja2
  • A lib/python/moa/template/local_templates/maq_se.moa
  • A lib/python/moa/template/local_templates/mummer.jinja2
  • A lib/python/moa/template/local_templates/mummer.moa
  • A lib/python/moa/template/local_templates/ncbi.jinja2
  • A lib/python/moa/template/local_templates/ncbi.moa
  • A lib/python/moa/template/local_templates/orthomcl.jinja2
  • A lib/python/moa/template/local_templates/orthomcl.moa
  • A lib/python/moa/template/local_templates/orthomcl.tables.py
  • A lib/python/moa/template/local_templates/project.jinja2
  • A lib/python/moa/template/local_templates/project.moa
  • A lib/python/moa/template/local_templates/recursive_map.jinja2
  • A lib/python/moa/template/local_templates/recursive_map.moa
  • A lib/python/moa/template/local_templates/reduce.jinja2
  • A lib/python/moa/template/local_templates/reduce.moa
  • A lib/python/moa/template/local_templates/samtools_pileup.jinja2
  • A lib/python/moa/template/local_templates/samtools_pileup.moa
  • A lib/python/moa/template/local_templates/simple.jinja2
  • A lib/python/moa/template/local_templates/simple.moa
  • A lib/python/moa/template/local_templates/smalt_pe.jinja2
  • A lib/python/moa/template/local_templates/smalt_pe.moa
  • A lib/python/moa/template/local_templates/smaltdb.jinja2
  • A lib/python/moa/template/local_templates/smaltdb.moa
  • A lib/python/moa/template/local_templates/soapdenovo_pe.jinja2
  • A lib/python/moa/template/local_templates/soapdenovo_pe.moa
  • A lib/python/moa/template/local_templates/soapdenovo_postprocess.jinja2
  • A lib/python/moa/template/local_templates/soapdenovo_postprocess.moa
  • A lib/python/moa/template/local_templates/statsidx.jinja2
  • A lib/python/moa/template/local_templates/statsidx.moa
  • A lib/python/moa/template/local_templates/sync.jinja2
  • A lib/python/moa/template/local_templates/sync.moa
  • A lib/python/moa/template/local_templates/sync.run.py
  • A lib/python/moa/template/local_templates/unittest.jinja2
  • A lib/python/moa/template/local_templates/unittest.moa
  • A lib/python/moa/template/local_templates/wget.jinja2
  • A lib/python/moa/template/local_templates/wget.moa
  • A template2
  • R template2/abyss_pe.jinja2
  • R template2/abyss_pe.moa
  • R template2/abyss_se.jinja2
  • R template2/abyss_se.moa
  • R template2/archroot.jinja2
  • R template2/archroot.moa
  • R template2/bamextract.jinja2
  • R template2/bamextract.moa
  • R template2/bdbb.jinja2
  • R template2/bdbb.moa
  • R template2/bfast_aln.jinja2
  • R template2/bfast_aln.moa
  • R template2/bfast_db.jinja2
  • R template2/bfast_db.moa
  • R template2/blast.jinja2
  • R template2/blast.moa
  • R template2/blastdb.jinja2
  • R template2/blastdb.moa
  • R template2/bowtie.jinja2
  • R template2/bowtie.moa
  • R template2/bowtie_pe.finish.jinja2
  • R template2/bowtie_pe.jinja2
  • R template2/bowtie_pe.moa
  • R template2/bowtie_se.jinja2
  • R template2/bowtie_se.moa
  • R template2/bowtiedb.jinja2
  • R template2/bowtiedb.moa
  • R template2/bwa_aln.jinja2
  • R template2/bwa_aln.moa
  • R template2/bwa_index.jinja2
  • R template2/bwa_index.moa
  • R template2/bwa_sampe.jinja2
  • R template2/bwa_sampe.moa
  • R template2/bwa_samse.jinja2
  • R template2/bwa_samse.moa
  • R template2/cdsmatrix.jinja2
  • R template2/cdsmatrix.moa
  • R template2/empty.jinja2
  • R template2/empty.moa
  • R template2/fastainfo.finish.py
  • R template2/fastainfo.moa
  • R template2/fastainfo.run.py
  • R template2/fastqc.jinja2
  • R template2/fastqc.moa
  • R template2/fastx_clipper.jinja2
  • R template2/fastx_clipper.moa
  • R template2/fastx_qual_stats.jinja2
  • R template2/fastx_qual_stats.moa
  • R template2/filterwgs_pair.jinja2
  • R template2/filterwgs_pair.moa
  • R template2/genemarks.jinja2
  • R template2/genemarks.moa
  • R template2/glimmer3.jinja2
  • R template2/glimmer3.moa
  • R template2/gmap.jinja2
  • R template2/gmap.moa
  • R template2/gmapdb.jinja2
  • R template2/gmapdb.moa
  • R template2/gsMapper.jinja2
  • R template2/hagfish.jinja2
  • R template2/hagfish.moa
  • R template2/kanga.jinja2
  • R template2/kanga.moa
  • R template2/kangar_pe.jinja2
  • R template2/kangar_pe.moa
  • R template2/kangar_se.jinja2
  • R template2/kangar_se.moa
  • R template2/kangax.jinja2
  • R template2/kangax.moa
  • R template2/map.jinja2
  • R template2/map.moa
  • R template2/map2.jinja2
  • R template2/map2.moa
  • R template2/map22.jinja2
  • R template2/map22.moa
  • R template2/maq_pe.jinja2
  • R template2/maq_pe.moa
  • R template2/maq_se.jinja2
  • R template2/maq_se.moa
  • R template2/mummer.jinja2
  • R template2/mummer.moa
  • R template2/ncbi.jinja2
  • R template2/ncbi.moa
  • R template2/orthomcl.jinja2
  • R template2/orthomcl.moa
  • R template2/orthomcl.tables.py
  • R template2/project.jinja2
  • R template2/project.moa
  • R template2/recursive_map.jinja2
  • R template2/recursive_map.moa
  • R template2/reduce.jinja2
  • R template2/reduce.moa
  • R template2/samtools_pileup.jinja2
  • R template2/samtools_pileup.moa
  • R template2/simple.jinja2
  • R template2/simple.moa
  • R template2/smalt_pe.jinja2
  • R template2/smalt_pe.moa
  • R template2/smaltdb.jinja2
  • R template2/smaltdb.moa
  • R template2/soapdenovo_pe.jinja2
  • R template2/soapdenovo_pe.moa
  • R template2/soapdenovo_postprocess.jinja2
  • R template2/soapdenovo_postprocess.moa
  • R template2/statsidx.jinja2
  • R template2/statsidx.moa
  • R template2/sync.jinja2
  • R template2/sync.moa
  • R template2/sync.run.py
  • R template2/unittest.jinja2
  • R template2/unittest.moa
  • R template2/wget.jinja2
  • R template2/wget.moa