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Changeset [d7b6987a49e6aaaa39ab1396dca33d0fcd9bbaaa] by Mark Fiers

Revision d7b6987a49e6aaaa39ab1396dca33d0fcd9bbaaa, committed by Mark Fiers · January 5th, 2012 @ 02:35 AM

129 changed files

• M _sources/api/plugin/index.txt
• M _sources/commands/index.txt
• M _static/MoaManual.pdf
• M api/Yaco.html
• M api/actor.html
• M api/backend/gnumake.html
• M api/backend/index.html
• M api/backend/ruff.html
• M api/commands.html
• M api/fist.html
• M api/index.html
• M api/job.html
• M api/jobConf.html
• M api/plugin/adhoc.html
• M api/plugin/configure.html
• M api/plugin/extraCommands.html
• M api/plugin/fileset.html
• M api/plugin/help.html
• M api/plugin/index.html
• M api/plugin/info.html
• M api/plugin/lock.html
• M api/plugin/logger.html
• M api/plugin/logo.html
• M api/plugin/moaGit.html
• M api/plugin/moautil.html
• M api/plugin/newjob.html
• M api/plugin/parameterCheck.html
• M api/plugin/prompt.html
• M api/plugin/status.html
• M api/plugin/template.html
• M api/plugin/test.html
• M api/plugin/twit.html
• M api/sysConf.html
• M api/template/index.html
• M api/template/provider/core.html
• M api/template/provider/index.html
• M api/ui.html
• M api/utils.html
• M commands/index.html
• M commands/private.html
• M configuration.html
• M coretemplates.html
• M execution.html
• M filesets.html
• M genindex.html
• M goals.html
• M index.html
• M install.html
• M intro.html
• M py-modindex.html
• M search.html
• M searchindex.js
• M templates/abyss_pe.html
• M templates/abyss_se.html
• M templates/adhoc.html
• M templates/bamextract.html
• M templates/bartab.html
• M templates/bdbb.html
• M templates/bfast_aln.html
• M templates/bfast_db.html
• M templates/blast.html
• M templates/blastdb.html
• M templates/blat.html
• M templates/bowtie.html
• M templates/bowtie_pe.html
• M templates/bowtie_se.html
• M templates/bowtiedb.html
• M templates/bwa_aln.html
• M templates/bwa_index.html
• M templates/bwa_sampe.html
• M templates/bwa_samse.html
• M templates/cdsmatrix.html
• M templates/cleanFasta.html
• M templates/clustalgroup.html
• M templates/clustalpair.html
• M templates/clustalw.html
• M templates/concatenate.html
• M templates/dottup.html
• M templates/empty.html
• M templates/fasta2gff.html
• M templates/fastainfo.html
• M templates/fastqc.html
• M templates/fastx_clipper.html
• M templates/fastx_qual_stats.html
• M templates/gather.html
• M templates/genemarks.html
• M templates/getorf.html
• M templates/glimmer3.html
• M templates/gmap.html
• M templates/gmapdb.html
• M templates/gsMapper.html
• M templates/h_blast.html
• M templates/hagfish.html
• M templates/index.html
• M templates/kanga.html
• M templates/kangar_pe.html
• M templates/kangar_se.html
• M templates/kangax.html
• M templates/lftp.html
• M templates/map.html
• M templates/maq_fasta2bfa.html
• M templates/maq_fastq2bfq.html
• M templates/maq_match_pair.html
• M templates/maq_pe.html
• M templates/maq_se.html
• M templates/moatest.html
• M templates/mummer.html
• M templates/ncbi.html
• M templates/newbler.html
• M templates/newjobtest.html
• M templates/nstretch.html
• M templates/orthomcl.html
• M templates/pregap.html
• M templates/project.html
• M templates/reduce.html
• M templates/sam2bam.html
• M templates/samtools_pileup.html
• M templates/sffinfo.html
• M templates/simple.html
• M templates/soapdenovo_pe.html
• M templates/statsidx.html
• M templates/sync.html
• M templates/unittest.html
• M templates/varscan.html
• M templates/vpcr.html
• M templates/vpcr_list.html
• M templates/wget.html
• M using.html
• M write_template.html