Changeset [eb9826f12f5dd958ccd31cfaad0ff34b16321cf8] by Mark Fiers
October 23rd, 2012 @ 11:05 PM
refactoring source tree
https://github.com/mfiers/Moa/commit/eb9826f12f5dd958ccd31cfaad0ff3...
Committed by Mark Fiers
- A moa/.gitignore
- A moa/__init__.py
- A moa/actor.py
- A moa/args.py
- A moa/backend/__init__.py
- A moa/backend/nojob.py
- A moa/backend/ruff/__init__.py
- A moa/backend/ruff/base.py
- A moa/backend/ruff/commands.py
- A moa/backend/ruff/executor.py
- A moa/backend/ruff/map.py
- A moa/backend/ruff/reduce.py
- A moa/backend/ruff/simple.py
- A moa/backend/ruff/test.py
- A moa/cli.py
- A moa/commands.py
- A moa/exceptions.py
- A moa/filesets.py
- A moa/job.py
- A moa/jobConf.py
- A moa/logger.py
- A moa/moajinja.py
- A moa/plugin/__init__.py
- A moa/plugin/job/__init__.py
- A moa/plugin/job/completion.py
- A moa/plugin/job/metavar.py
- A moa/plugin/job/smw/__init__.py
- A moa/plugin/job/smw/templates/blogmessage.jinja2
- A moa/plugin/job/smw/templates/changemessage.jinja2
- A moa/plugin/job/smw/templates/default/Category:Moa.smw
- A moa/plugin/job/smw/templates/default/Category:MoaChangeMessage.smw
- A moa/plugin/job/smw/templates/default/Moa.smw
- A moa/plugin/job/smw/templates/default/Property:MoaBlogTeaser.smw
- A moa/plugin/job/smw/templates/default/Property:MoaChangeMessage.smw
- A moa/plugin/job/smw/templates/default/Property:MoaCommandLine.smw
- A moa/plugin/job/smw/templates/default/Property:MoaHost.smw
- A moa/plugin/job/smw/templates/default/Property:MoaJob.smw
- A moa/plugin/job/smw/templates/default/Property:MoaJobId.smw
- A moa/plugin/job/smw/templates/default/Property:MoaJobTitle.smw
- A moa/plugin/job/smw/templates/default/Property:MoaPath.smw
- A moa/plugin/job/smw/templates/default/Property:MoaProject.smw
- A moa/plugin/job/smw/templates/default/Property:MoaSmwJobId.smw
- A moa/plugin/job/smw/templates/default/Property:Modification\ date.smw
- A moa/plugin/job/smw/templates/default/Property:Modification_date.smw
- A moa/plugin/job/smw/templates/job/default.jinja2
- A moa/plugin/job/smw/templates/job/project.jinja2
- A moa/plugin/job/versioning.py
- A moa/plugin/system/__init__.py
- A moa/plugin/system/adhoc.py
- A moa/plugin/system/configure.py
- A moa/plugin/system/doc/__init__.py
- A moa/plugin/system/doc/pelican_util.py
- A moa/plugin/system/doc/templates/file.page.jinja2
- A moa/plugin/system/doc/templates/parameter.page.jinja2
- A moa/plugin/system/doc/templates/pelican.conf.jinja2
- A moa/plugin/system/doc/templates/redirect.jinja2
- A moa/plugin/system/doc/templates/template.page.jinja2
- A moa/plugin/system/doc/templates/versioning.page.jinja2
- A moa/plugin/system/doc/theme/LICENSE.txt
- A moa/plugin/system/doc/theme/NOTICE.txt
- A moa/plugin/system/doc/theme/static/bootstrap.min.css
- A moa/plugin/system/doc/theme/static/forkme_right_darkblue_121621.png
- A moa/plugin/system/doc/theme/static/html5.js
- A moa/plugin/system/doc/theme/static/images/icons/activestate.png
- A moa/plugin/system/doc/theme/static/images/icons/bitbucket.png
- A moa/plugin/system/doc/theme/static/images/icons/delicious.png
- A moa/plugin/system/doc/theme/static/images/icons/favicon.ico
- A moa/plugin/system/doc/theme/static/images/icons/github.png
- A moa/plugin/system/doc/theme/static/images/icons/jamendo.png
- A moa/plugin/system/doc/theme/static/images/icons/lastfm.png
- A moa/plugin/system/doc/theme/static/images/icons/linkedin.png
- A moa/plugin/system/doc/theme/static/images/icons/phosting.png
- A moa/plugin/system/doc/theme/static/images/icons/reader.png
- A moa/plugin/system/doc/theme/static/images/icons/rss.png
- A moa/plugin/system/doc/theme/static/images/icons/stackoverflow.png
- A moa/plugin/system/doc/theme/static/images/icons/twitter.png
- A moa/plugin/system/doc/theme/static/images/icons/weibo.png
- A moa/plugin/system/doc/theme/static/images/moa.logo.very.small.png
- A moa/plugin/system/doc/theme/static/local.css
- A moa/plugin/system/doc/theme/static/pygments.css
- A moa/plugin/system/doc/theme/templates/analytics.html
- A moa/plugin/system/doc/theme/templates/archives.html
- A moa/plugin/system/doc/theme/templates/article.html
- A moa/plugin/system/doc/theme/templates/author.html
- A moa/plugin/system/doc/theme/templates/base.html
- A moa/plugin/system/doc/theme/templates/categories.html
- A moa/plugin/system/doc/theme/templates/category.html
- A moa/plugin/system/doc/theme/templates/disqus.html
- A moa/plugin/system/doc/theme/templates/facebook.html
- A moa/plugin/system/doc/theme/templates/github.html
- A moa/plugin/system/doc/theme/templates/index.html
- A moa/plugin/system/doc/theme/templates/metadata.html
- A moa/plugin/system/doc/theme/templates/page.html
- A moa/plugin/system/doc/theme/templates/tag.html
- A moa/plugin/system/doc/theme/templates/tags.html
- A moa/plugin/system/doc/theme/templates/twitter.html
- A moa/plugin/system/evernote.py
- A moa/plugin/system/extraCommands.py
- A moa/plugin/system/fileset.py
- A moa/plugin/system/help.py
- A moa/plugin/system/info.py
- A moa/plugin/system/lock.py
- A moa/plugin/system/logger.py
- A moa/plugin/system/logo.py
- A moa/plugin/system/mail.py
- A moa/plugin/system/moaGit.py
- A moa/plugin/system/moautil.py
- A moa/plugin/system/newjob.py
- A moa/plugin/system/openLavaActor.py
- A moa/plugin/system/parameterCheck.py
- A moa/plugin/system/project.py
- A moa/plugin/system/prompt.py
- A moa/plugin/system/remoteLogger.py
- A moa/plugin/system/sgeActor.py
- A moa/plugin/system/status.py
- A moa/plugin/system/template.py
- A moa/plugin/system/treemap.py
- A moa/plugin/system/twit.py
- A moa/plugin/system/umask.py
- A moa/plugin/system/varInject.py
- A moa/resources.py
- A moa/script.py
- A moa/sysConf.py
- A moa/template/__init__.py
- A moa/template/local_templates/abyss_pe.jinja2
- A moa/template/local_templates/abyss_pe.moa
- A moa/template/local_templates/abyss_se.jinja2
- A moa/template/local_templates/abyss_se.moa
- A moa/template/local_templates/archroot.jinja2
- A moa/template/local_templates/archroot.moa
- A moa/template/local_templates/autohagfish.jinja2
- A moa/template/local_templates/autohagfish.moa
- A moa/template/local_templates/bamextract.jinja2
- A moa/template/local_templates/bamextract.moa
- A moa/template/local_templates/bdbb.jinja2
- A moa/template/local_templates/bdbb.moa
- A moa/template/local_templates/bfast_aln.jinja2
- A moa/template/local_templates/bfast_aln.moa
- A moa/template/local_templates/bfast_db.jinja2
- A moa/template/local_templates/bfast_db.moa
- A moa/template/local_templates/blast.jinja2
- A moa/template/local_templates/blast.moa
- A moa/template/local_templates/blastdb.jinja2
- A moa/template/local_templates/blastdb.moa
- A moa/template/local_templates/bowtie.jinja2
- A moa/template/local_templates/bowtie.moa
- A moa/template/local_templates/bowtie_pe.finish.jinja2
- A moa/template/local_templates/bowtie_pe.jinja2
- A moa/template/local_templates/bowtie_pe.moa
- A moa/template/local_templates/bowtie_se.jinja2
- A moa/template/local_templates/bowtie_se.moa
- A moa/template/local_templates/bowtiedb.jinja2
- A moa/template/local_templates/bowtiedb.moa
- A moa/template/local_templates/bwa_aln.jinja2
- A moa/template/local_templates/bwa_aln.moa
- A moa/template/local_templates/bwa_index.jinja2
- A moa/template/local_templates/bwa_index.moa
- A moa/template/local_templates/bwa_sampe.jinja2
- A moa/template/local_templates/bwa_sampe.moa
- A moa/template/local_templates/bwa_samse.jinja2
- A moa/template/local_templates/bwa_samse.moa
- A moa/template/local_templates/cdsmatrix.jinja2
- A moa/template/local_templates/cdsmatrix.moa
- A moa/template/local_templates/empty.jinja2
- A moa/template/local_templates/empty.moa
- A moa/template/local_templates/fastainfo.finish.py
- A moa/template/local_templates/fastainfo.moa
- A moa/template/local_templates/fastainfo.run.py
- A moa/template/local_templates/fastqc.jinja2
- A moa/template/local_templates/fastqc.moa
- A moa/template/local_templates/fastx_clipper.jinja2
- A moa/template/local_templates/fastx_clipper.moa
- A moa/template/local_templates/fastx_qual_stats.jinja2
- A moa/template/local_templates/fastx_qual_stats.moa
- A moa/template/local_templates/filterwgs_pair.jinja2
- A moa/template/local_templates/filterwgs_pair.moa
- A moa/template/local_templates/genemarks.jinja2
- A moa/template/local_templates/genemarks.moa
- A moa/template/local_templates/glimmer3.jinja2
- A moa/template/local_templates/glimmer3.moa
- A moa/template/local_templates/gmap.jinja2
- A moa/template/local_templates/gmap.moa
- A moa/template/local_templates/gmapdb.jinja2
- A moa/template/local_templates/gmapdb.moa
- A moa/template/local_templates/gsMapper.jinja2
- A moa/template/local_templates/hagfish.jinja2
- A moa/template/local_templates/hagfish.moa
- A moa/template/local_templates/kanga.jinja2
- A moa/template/local_templates/kanga.moa
- A moa/template/local_templates/kangar_pe.jinja2
- A moa/template/local_templates/kangar_pe.moa
- A moa/template/local_templates/kangar_se.jinja2
- A moa/template/local_templates/kangar_se.moa
- A moa/template/local_templates/kangax.jinja2
- A moa/template/local_templates/kangax.moa
- A moa/template/local_templates/map.jinja2
- A moa/template/local_templates/map.moa
- A moa/template/local_templates/map2.jinja2
- A moa/template/local_templates/map2.moa
- A moa/template/local_templates/map22.jinja2
- A moa/template/local_templates/map22.moa
- A moa/template/local_templates/maq_pe.jinja2
- A moa/template/local_templates/maq_pe.moa
- A moa/template/local_templates/maq_se.jinja2
- A moa/template/local_templates/maq_se.moa
- A moa/template/local_templates/mummer.jinja2
- A moa/template/local_templates/mummer.moa
- A moa/template/local_templates/ncbi.jinja2
- A moa/template/local_templates/ncbi.moa
- A moa/template/local_templates/orthomcl.jinja2
- A moa/template/local_templates/orthomcl.moa
- A moa/template/local_templates/orthomcl.tables.py
- A moa/template/local_templates/project.jinja2
- A moa/template/local_templates/project.moa
- A moa/template/local_templates/recursive_map.jinja2
- A moa/template/local_templates/recursive_map.moa
- A moa/template/local_templates/reduce.jinja2
- A moa/template/local_templates/reduce.moa
- A moa/template/local_templates/samtools_pileup.jinja2
- A moa/template/local_templates/samtools_pileup.moa
- A moa/template/local_templates/simple.jinja2
- A moa/template/local_templates/simple.moa
- A moa/template/local_templates/smalt_pe.jinja2
- A moa/template/local_templates/smalt_pe.moa
- A moa/template/local_templates/smaltdb.jinja2
- A moa/template/local_templates/smaltdb.moa
- A moa/template/local_templates/soapdenovo_pe.jinja2
- A moa/template/local_templates/soapdenovo_pe.moa
- A moa/template/local_templates/soapdenovo_postprocess.jinja2
- A moa/template/local_templates/soapdenovo_postprocess.moa
- A moa/template/local_templates/statsidx.jinja2
- A moa/template/local_templates/statsidx.moa
- A moa/template/local_templates/sync.jinja2
- A moa/template/local_templates/sync.moa
- A moa/template/local_templates/sync.run.py
- A moa/template/local_templates/unittest.jinja2
- A moa/template/local_templates/unittest.moa
- A moa/template/local_templates/wget.jinja2
- A moa/template/local_templates/wget.moa
- A moa/template/provider/__init__.py
- A moa/template/provider/archive.py
- A moa/template/provider/archive_global.py
- A moa/template/provider/core.py
- A moa/template/provider/gitmodule.py
- A moa/template/provider/local.py
- A moa/template/template.py
- A moa/ui.py
- A moa/utils.py
- A moa/version.py
- R lib/python/moa/.gitignore
- R lib/python/moa/__init__.py
- R lib/python/moa/actor.py
- R lib/python/moa/args.py
- R lib/python/moa/backend/__init__.py
- R lib/python/moa/backend/nojob.py
- R lib/python/moa/backend/ruff/__init__.py
- R lib/python/moa/backend/ruff/base.py
- R lib/python/moa/backend/ruff/commands.py
- R lib/python/moa/backend/ruff/executor.py
- R lib/python/moa/backend/ruff/map.py
- R lib/python/moa/backend/ruff/reduce.py
- R lib/python/moa/backend/ruff/simple.py
- R lib/python/moa/backend/ruff/test.py
- R lib/python/moa/cli.py
- R lib/python/moa/commands.py
- R lib/python/moa/exceptions.py
- R lib/python/moa/filesets.py
- R lib/python/moa/job.py
- R lib/python/moa/jobConf.py
- R lib/python/moa/logger.py
- R lib/python/moa/moajinja.py
- R lib/python/moa/plugin/__init__.py
- R lib/python/moa/plugin/job/__init__.py
- R lib/python/moa/plugin/job/completion.py
- R lib/python/moa/plugin/job/metavar.py
- R lib/python/moa/plugin/job/smw/__init__.py
- R lib/python/moa/plugin/job/smw/templates/blogmessage.jinja2
- R lib/python/moa/plugin/job/smw/templates/changemessage.jinja2
- R lib/python/moa/plugin/job/smw/templates/default/Category:Moa.smw
- R lib/python/moa/plugin/job/smw/templates/default/Category:MoaChangeMessage.smw
- R lib/python/moa/plugin/job/smw/templates/default/Moa.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaBlogTeaser.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaChangeMessage.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaCommandLine.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaHost.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaJob.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaJobId.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaJobTitle.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaPath.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaProject.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:MoaSmwJobId.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:Modification\ date.smw
- R lib/python/moa/plugin/job/smw/templates/default/Property:Modification_date.smw
- R lib/python/moa/plugin/job/smw/templates/job/default.jinja2
- R lib/python/moa/plugin/job/smw/templates/job/project.jinja2
- R lib/python/moa/plugin/job/versioning.py
- R lib/python/moa/plugin/system/__init__.py
- R lib/python/moa/plugin/system/adhoc.py
- R lib/python/moa/plugin/system/configure.py
- R lib/python/moa/plugin/system/doc/__init__.py
- R lib/python/moa/plugin/system/doc/pelican_util.py
- R lib/python/moa/plugin/system/doc/templates/file.page.jinja2
- R lib/python/moa/plugin/system/doc/templates/parameter.page.jinja2
- R lib/python/moa/plugin/system/doc/templates/pelican.conf.jinja2
- R lib/python/moa/plugin/system/doc/templates/redirect.jinja2
- R lib/python/moa/plugin/system/doc/templates/template.page.jinja2
- R lib/python/moa/plugin/system/doc/templates/versioning.page.jinja2
- R lib/python/moa/plugin/system/doc/theme/LICENSE.txt
- R lib/python/moa/plugin/system/doc/theme/NOTICE.txt
- R lib/python/moa/plugin/system/doc/theme/static/bootstrap.min.css
- R lib/python/moa/plugin/system/doc/theme/static/forkme_right_darkblue_121621.png
- R lib/python/moa/plugin/system/doc/theme/static/html5.js
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/activestate.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/bitbucket.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/delicious.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/favicon.ico
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/github.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/jamendo.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/lastfm.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/linkedin.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/phosting.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/reader.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/rss.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/stackoverflow.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/twitter.png
- R lib/python/moa/plugin/system/doc/theme/static/images/icons/weibo.png
- R lib/python/moa/plugin/system/doc/theme/static/images/moa.logo.very.small.png
- R lib/python/moa/plugin/system/doc/theme/static/local.css
- R lib/python/moa/plugin/system/doc/theme/static/pygments.css
- R lib/python/moa/plugin/system/doc/theme/templates/analytics.html
- R lib/python/moa/plugin/system/doc/theme/templates/archives.html
- R lib/python/moa/plugin/system/doc/theme/templates/article.html
- R lib/python/moa/plugin/system/doc/theme/templates/author.html
- R lib/python/moa/plugin/system/doc/theme/templates/base.html
- R lib/python/moa/plugin/system/doc/theme/templates/categories.html
- R lib/python/moa/plugin/system/doc/theme/templates/category.html
- R lib/python/moa/plugin/system/doc/theme/templates/disqus.html
- R lib/python/moa/plugin/system/doc/theme/templates/facebook.html
- R lib/python/moa/plugin/system/doc/theme/templates/github.html
- R lib/python/moa/plugin/system/doc/theme/templates/index.html
- R lib/python/moa/plugin/system/doc/theme/templates/metadata.html
- R lib/python/moa/plugin/system/doc/theme/templates/page.html
- R lib/python/moa/plugin/system/doc/theme/templates/tag.html
- R lib/python/moa/plugin/system/doc/theme/templates/tags.html
- R lib/python/moa/plugin/system/doc/theme/templates/twitter.html
- R lib/python/moa/plugin/system/evernote.py
- R lib/python/moa/plugin/system/extraCommands.py
- R lib/python/moa/plugin/system/fileset.py
- R lib/python/moa/plugin/system/help.py
- R lib/python/moa/plugin/system/info.py
- R lib/python/moa/plugin/system/lock.py
- R lib/python/moa/plugin/system/logger.py
- R lib/python/moa/plugin/system/logo.py
- R lib/python/moa/plugin/system/mail.py
- R lib/python/moa/plugin/system/moaGit.py
- R lib/python/moa/plugin/system/moautil.py
- R lib/python/moa/plugin/system/newjob.py
- R lib/python/moa/plugin/system/openLavaActor.py
- R lib/python/moa/plugin/system/parameterCheck.py
- R lib/python/moa/plugin/system/project.py
- R lib/python/moa/plugin/system/prompt.py
- R lib/python/moa/plugin/system/remoteLogger.py
- R lib/python/moa/plugin/system/sgeActor.py
- R lib/python/moa/plugin/system/status.py
- R lib/python/moa/plugin/system/template.py
- R lib/python/moa/plugin/system/treemap.py
- R lib/python/moa/plugin/system/twit.py
- R lib/python/moa/plugin/system/umask.py
- R lib/python/moa/plugin/system/varInject.py
- R lib/python/moa/resources.py
- R lib/python/moa/script.py
- R lib/python/moa/sysConf.py
- R lib/python/moa/template/__init__.py
- R lib/python/moa/template/local_templates/abyss_pe.jinja2
- R lib/python/moa/template/local_templates/abyss_pe.moa
- R lib/python/moa/template/local_templates/abyss_se.jinja2
- R lib/python/moa/template/local_templates/abyss_se.moa
- R lib/python/moa/template/local_templates/archroot.jinja2
- R lib/python/moa/template/local_templates/archroot.moa
- R lib/python/moa/template/local_templates/autohagfish.jinja2
- R lib/python/moa/template/local_templates/autohagfish.moa
- R lib/python/moa/template/local_templates/bamextract.jinja2
- R lib/python/moa/template/local_templates/bamextract.moa
- R lib/python/moa/template/local_templates/bdbb.jinja2
- R lib/python/moa/template/local_templates/bdbb.moa
- R lib/python/moa/template/local_templates/bfast_aln.jinja2
- R lib/python/moa/template/local_templates/bfast_aln.moa
- R lib/python/moa/template/local_templates/bfast_db.jinja2
- R lib/python/moa/template/local_templates/bfast_db.moa
- R lib/python/moa/template/local_templates/blast.jinja2
- R lib/python/moa/template/local_templates/blast.moa
- R lib/python/moa/template/local_templates/blastdb.jinja2
- R lib/python/moa/template/local_templates/blastdb.moa
- R lib/python/moa/template/local_templates/bowtie.jinja2
- R lib/python/moa/template/local_templates/bowtie.moa
- R lib/python/moa/template/local_templates/bowtie_pe.finish.jinja2
- R lib/python/moa/template/local_templates/bowtie_pe.jinja2
- R lib/python/moa/template/local_templates/bowtie_pe.moa
- R lib/python/moa/template/local_templates/bowtie_se.jinja2
- R lib/python/moa/template/local_templates/bowtie_se.moa
- R lib/python/moa/template/local_templates/bowtiedb.jinja2
- R lib/python/moa/template/local_templates/bowtiedb.moa
- R lib/python/moa/template/local_templates/bwa_aln.jinja2
- R lib/python/moa/template/local_templates/bwa_aln.moa
- R lib/python/moa/template/local_templates/bwa_index.jinja2
- R lib/python/moa/template/local_templates/bwa_index.moa
- R lib/python/moa/template/local_templates/bwa_sampe.jinja2
- R lib/python/moa/template/local_templates/bwa_sampe.moa
- R lib/python/moa/template/local_templates/bwa_samse.jinja2
- R lib/python/moa/template/local_templates/bwa_samse.moa
- R lib/python/moa/template/local_templates/cdsmatrix.jinja2
- R lib/python/moa/template/local_templates/cdsmatrix.moa
- R lib/python/moa/template/local_templates/empty.jinja2
- R lib/python/moa/template/local_templates/empty.moa
- R lib/python/moa/template/local_templates/fastainfo.finish.py
- R lib/python/moa/template/local_templates/fastainfo.moa
- R lib/python/moa/template/local_templates/fastainfo.run.py
- R lib/python/moa/template/local_templates/fastqc.jinja2
- R lib/python/moa/template/local_templates/fastqc.moa
- R lib/python/moa/template/local_templates/fastx_clipper.jinja2
- R lib/python/moa/template/local_templates/fastx_clipper.moa
- R lib/python/moa/template/local_templates/fastx_qual_stats.jinja2
- R lib/python/moa/template/local_templates/fastx_qual_stats.moa
- R lib/python/moa/template/local_templates/filterwgs_pair.jinja2
- R lib/python/moa/template/local_templates/filterwgs_pair.moa
- R lib/python/moa/template/local_templates/genemarks.jinja2
- R lib/python/moa/template/local_templates/genemarks.moa
- R lib/python/moa/template/local_templates/glimmer3.jinja2
- R lib/python/moa/template/local_templates/glimmer3.moa
- R lib/python/moa/template/local_templates/gmap.jinja2
- R lib/python/moa/template/local_templates/gmap.moa
- R lib/python/moa/template/local_templates/gmapdb.jinja2
- R lib/python/moa/template/local_templates/gmapdb.moa
- R lib/python/moa/template/local_templates/gsMapper.jinja2
- R lib/python/moa/template/local_templates/hagfish.jinja2
- R lib/python/moa/template/local_templates/hagfish.moa
- R lib/python/moa/template/local_templates/kanga.jinja2
- R lib/python/moa/template/local_templates/kanga.moa
- R lib/python/moa/template/local_templates/kangar_pe.jinja2
- R lib/python/moa/template/local_templates/kangar_pe.moa
- R lib/python/moa/template/local_templates/kangar_se.jinja2
- R lib/python/moa/template/local_templates/kangar_se.moa
- R lib/python/moa/template/local_templates/kangax.jinja2
- R lib/python/moa/template/local_templates/kangax.moa
- R lib/python/moa/template/local_templates/map.jinja2
- R lib/python/moa/template/local_templates/map.moa
- R lib/python/moa/template/local_templates/map2.jinja2
- R lib/python/moa/template/local_templates/map2.moa
- R lib/python/moa/template/local_templates/map22.jinja2
- R lib/python/moa/template/local_templates/map22.moa
- R lib/python/moa/template/local_templates/maq_pe.jinja2
- R lib/python/moa/template/local_templates/maq_pe.moa
- R lib/python/moa/template/local_templates/maq_se.jinja2
- R lib/python/moa/template/local_templates/maq_se.moa
- R lib/python/moa/template/local_templates/mummer.jinja2
- R lib/python/moa/template/local_templates/mummer.moa
- R lib/python/moa/template/local_templates/ncbi.jinja2
- R lib/python/moa/template/local_templates/ncbi.moa
- R lib/python/moa/template/local_templates/orthomcl.jinja2
- R lib/python/moa/template/local_templates/orthomcl.moa
- R lib/python/moa/template/local_templates/orthomcl.tables.py
- R lib/python/moa/template/local_templates/project.jinja2
- R lib/python/moa/template/local_templates/project.moa
- R lib/python/moa/template/local_templates/recursive_map.jinja2
- R lib/python/moa/template/local_templates/recursive_map.moa
- R lib/python/moa/template/local_templates/reduce.jinja2
- R lib/python/moa/template/local_templates/reduce.moa
- R lib/python/moa/template/local_templates/samtools_pileup.jinja2
- R lib/python/moa/template/local_templates/samtools_pileup.moa
- R lib/python/moa/template/local_templates/simple.jinja2
- R lib/python/moa/template/local_templates/simple.moa
- R lib/python/moa/template/local_templates/smalt_pe.jinja2
- R lib/python/moa/template/local_templates/smalt_pe.moa
- R lib/python/moa/template/local_templates/smaltdb.jinja2
- R lib/python/moa/template/local_templates/smaltdb.moa
- R lib/python/moa/template/local_templates/soapdenovo_pe.jinja2
- R lib/python/moa/template/local_templates/soapdenovo_pe.moa
- R lib/python/moa/template/local_templates/soapdenovo_postprocess.jinja2
- R lib/python/moa/template/local_templates/soapdenovo_postprocess.moa
- R lib/python/moa/template/local_templates/statsidx.jinja2
- R lib/python/moa/template/local_templates/statsidx.moa
- R lib/python/moa/template/local_templates/sync.jinja2
- R lib/python/moa/template/local_templates/sync.moa
- R lib/python/moa/template/local_templates/sync.run.py
- R lib/python/moa/template/local_templates/unittest.jinja2
- R lib/python/moa/template/local_templates/unittest.moa
- R lib/python/moa/template/local_templates/wget.jinja2
- R lib/python/moa/template/local_templates/wget.moa
- R lib/python/moa/template/provider/__init__.py
- R lib/python/moa/template/provider/archive.py
- R lib/python/moa/template/provider/archive_global.py
- R lib/python/moa/template/provider/core.py
- R lib/python/moa/template/provider/gitmodule.py
- R lib/python/moa/template/provider/local.py
- R lib/python/moa/template/template.py
- R lib/python/moa/ui.py
- R lib/python/moa/utils.py
- R lib/python/moa/version.py
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lightweight workflows for bioinformatics