something fishy
-
john.mccallum (at plantandfood)
[Cfljam@pgenome 15.NCBI_onion_est_gmapdb]$ moa show Usage: {{bold}}{{green}}%prog {{blue}}[options] COMMAND ARGUMENTS{{reset}}
Universal Moa commands:
{{bold}} !{{reset}} : Moa-fy the last (bash) commandissued{{bold}} adhoc{{reset}} : Create an adhoc analysis {{bold}} cp{{reset}} : Copy a moa job {{bold}} list{{reset}} : Print a list of all known
templates{{bold}} map{{reset}} : Create a "map" adhoc analysis {{bold}} new{{reset}} : Create a new Moa job {{bold}} ren{{reset}} : Rename/renumber a job {{bold}} simple{{reset}} : Create a "simple" adhoc analysis {{bold}} tree{{reset}} : display a directory tree {{bold}} unittest{{reset}} : Run Moa unittests {{bold}} version{{reset}} : Print the moa version
Job specific Moa commands:
{{bold}} archive{{reset}} : Archive a job, {{bold}} blog{{reset}} : record a short note {{bold}} err{{reset}} : Returns stderr of the last moa run {{bold}} files{{reset}} : Show an overview of the files forthis job{{bold}} help{{reset}} : Display help for a template {{bold}} history{{reset}} : display a version control log {{bold}} kill{{reset}} : Kill a job {{bold}} lock{{reset}} : Lock this job - prevent execution {{bold}} log{{reset}} : Show the logs for this job {{bold}} out{{reset}} : Returns stdout of the last moa run {{bold}} pause{{reset}} : Pause a job {{bold}} refresh{{reset}} : Reload the template {{bold}} resume{{reset}} : Resume a job {{bold}} set{{reset}} : Set, change or remove variables {{bold}} show{{reset}} : Show configured variables {{bold}} status{{reset}} : Show the state of the current job {{bold}} tag{{reset}} : Tag the current version {{bold}} test{{reset}} : Test the currennt configuration {{bold}} unlock{{reset}} : Unlock this job {{bold}} unset{{reset}} : Remove a variable
input {{bold}}../00.NCBI_onion_nt/nt_out.fasta{{reset}}
input ../00.NCBI_onion_nt/nt_out.fasta
name {{bold}}NCBI_onion_nt_gmap{{reset}}
name NCBI_onion_nt_gmap
postcommand {{blue}}{{reset}}
postcommand
precommand {{blue}}{{reset}}
precommand
project {{blue}}{{reset}}
project
title {{bold}}gmapdb from NCBI onion ESTs{{reset}}
title gmapdb from NCBI onion ESTs
[Cfljam@pgenome 15.NCBI_onion_est_gmapdb]$
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