john.mccallum (at plantandfood)

[cfljam@pgenome 10.Chrom_1]$ pwd /data/moa/onion/map/20.USDA_2012/10.Chrom_1 [cfljam@pgenome 10.Chrom_1]$ moa show jobid l.o Chrom_1
postcommand l.o fastaExtrac...

[cfljam@pgenome 35.FT_reseq_2011]$ pwd /data/moa/onion/25.resequencing/35.FT_reseq_2011 [cfljam@pgenome 35.FT_reseq_2011]$ moa cp 70.popoolation_Tajima 69.popoo...

This needs -f force flag added (simple) or a clean method

[cfljam@pgenome 93.gsmapper_TSA_submit]$ moa show gsmap_name L Map_Nasik_to_SNP_markers_DHrefV2
jobid ...

[cfljam@pgenome 11.download_refseq_nt]$ pwd /data/moa/db/refseq_cplast/11.download_refseq_nt [cfljam@pgenome 11.download_refseq_nt]$ moa show db L nuccore
jobid...

This template doesnt respect fasta input.
Also the distinction between db and index base is rather confusing

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[cf...

moa@ubuntu:~/work/10.PAG_DEMO/00.reads$ moa blog
enter your blog message (ctrl-d on an empty line to finish) ...
Importing subset of reads for demo
Moa: Error r...

Filename completion when entering commands is still broken....

MOA strips off ./ when setting process

[cfljam@pgenome 10.bin]$ moa set process process:

./bin_FIE_data.R 00.data D049_WXT.csv binned_LTQ-mean.RData [cfljam@pg...

The problem is that IMHO..the job info browser view in SIMPLE is now quite cluttered to the point of being less informative and transparent...
as previously sug...