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john.mccallum (at plantandfood)

john.mccallum (at plantandfood)

error-maker · Member of 1 project: Moa

john.mccallum (at plantandfood)'s latest activity

Wednesday, November 14 2012
45 Simple template issue was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 12:35 AM

    [cfljam@pgenome 10.Chrom_1]$ pwd /data/moa/onion/map/20.USDA_2012/10.Chrom_1 [cfljam@pgenome 10.Chrom_1]$ moa show jobid l.o Chrom_1
    postcommand l.o fastaExtrac...
Monday, August 27 2012
44 MOa cp #$@!#@Boom was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 6:39 AM

    [cfljam@pgenome 35.FT_reseq_2011]$ pwd /data/moa/onion/25.resequencing/35.FT_reseq_2011 [cfljam@pgenome 35.FT_reseq_2011]$ moa cp 70.popoolation_Tajima 69.popoo...
Thursday, June 28 2012
43 BWA_PE template issue was created in Moa
Friday, June 15 2012
42 gsmapper template-force! was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 3:11 AM

    This needs -f force flag added (simple) or a clean method

    [cfljam@pgenome 93.gsmapper_TSA_submit]$ moa show gsmap_name L Map_Nasik_to_SNP_markers_DHrefV2
    jobid ...
Thursday, May 10 2012
41 NCBI Template returns ASN not fasta was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 6:13 PM

    [cfljam@pgenome 11.download_refseq_nt]$ pwd /data/moa/db/refseq_cplast/11.download_refseq_nt [cfljam@pgenome 11.download_refseq_nt]$ moa show db L nuccore
    jobid...
Wednesday, March 28 2012
40 Bowtie template issue was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 8:02 AM

    This template doesnt respect fasta input.
    Also the distinction between db and index base is rather confusing

    ...............................................

    [cf...
Thursday, January 05 2012
39 Blogerror was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 11:25 PM

    moa@ubuntu:~/work/10.PAG_DEMO/00.reads$ moa blog
    enter your blog message (ctrl-d on an empty line to finish) ...
    Importing subset of reads for demo
    Moa: Error r...
Wednesday, September 28 2011
38 Fix filename completion@!#@! was created in Moa
Wednesday, August 03 2011
37 executables in moa simple dir was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 2:24 AM

    MOA strips off ./ when setting process

    [cfljam@pgenome 10.bin]$ moa set process process:

    ./bin_FIE_data.R 00.data D049_WXT.csv binned_LTQ-mean.RData [cfljam@pg...
Tuesday, July 19 2011
36 Enduser view? was created in Moa
  • john.mccallum (at plantandfood)
    john.mccallum (at plantandfood) created the ticket at 10:43 PM

    The problem is that IMHO..the job info browser view in SIMPLE is now quite cluttered to the point of being less informative and transparent...
    as previously sug...