Moa cp broken?
Reported by john.mccallum (at plantandfood) | May 11th, 2011 @ 11:48 PM | in v1.1
[Cfljam@pgenome 21.BLAST_unfiltered]$ moa show db
../20.BLASTN_db_repeats/OnionRepeat
eval 1e-10
gff_blasthit F
gff_source BLAST
input ../01.UnfilteredGSSReads/JBVR.fasta
nohits 50
nothreads 2
outgff gff/.gff
output out/.out
postcommand
precommand
program blastn
project repeats
title Blast unfiltered onto repeat DB
[Cfljam@pgenome 21.BLAST_unfiltered]$ cd .. [Cfljam@pgenome
Repeats]$ ls 00.rawdata 01.UnfilteredGSSReads 02.FilteredGSSReads
10.RepeatScout 11.repeatmasker 15.BLASTN_repeats
16.BLASTX_uniprotPlants 20.BLASTN_db_repeats
21.BLAST_unfiltered
[Cfljam@pgenome Repeats]$ moa cp 21.BLAST_unfiltered
22.BLAST_filtered INF Copying from 21.BLAST_unfiltered to
22.BLAST_filtered
Error: Need 21.BLAST_unfiltered to be a moa directory
[Cfljam@pgenome Repeats]$ pwd /data/moa/onion/Repeats
[Cfljam@pgenome Repeats]$
Comments and changes to this ticket
-
MF May 12th, 2011 @ 12:20 AM
- State changed from “new” to “resolved”
Wow - fixing 24 broke this one - now both are ok.
cheers
Mark
Please Sign in or create a free account to add a new ticket.
With your very own profile, you can contribute to projects, track your activity, watch tickets, receive and update tickets through your email and much more.
Create new ticket
Create your profile
Help contribute to this project by taking a few moments to create your personal profile. Create your profile »
lightweight workflows for bioinformatics
john.mccallum (at plantandfood)
MF