Moa cp broken?
Reported by john.mccallum (at plantandfood) | May 11th, 2011 @ 11:48 PM | in v1.1
[Cfljam@pgenome 21.BLAST_unfiltered]$ moa show db
../20.BLASTN_db_repeats/OnionRepeat
eval 1e-10
gff_blasthit F
gff_source BLAST
input ../01.UnfilteredGSSReads/JBVR.fasta
nohits 50
nothreads 2
outgff gff/.gff
output out/.out
postcommand
precommand
program blastn
project repeats
title Blast unfiltered onto repeat DB
[Cfljam@pgenome 21.BLAST_unfiltered]$ cd .. [Cfljam@pgenome
Repeats]$ ls 00.rawdata 01.UnfilteredGSSReads 02.FilteredGSSReads
10.RepeatScout 11.repeatmasker 15.BLASTN_repeats
16.BLASTX_uniprotPlants 20.BLASTN_db_repeats
21.BLAST_unfiltered
[Cfljam@pgenome Repeats]$ moa cp 21.BLAST_unfiltered
22.BLAST_filtered INF Copying from 21.BLAST_unfiltered to
22.BLAST_filtered
Error: Need 21.BLAST_unfiltered to be a moa directory
[Cfljam@pgenome Repeats]$ pwd /data/moa/onion/Repeats
[Cfljam@pgenome Repeats]$
Comments and changes to this ticket
-
MF May 12th, 2011 @ 12:20 AM
- State changed from “new” to “resolved”
Wow - fixing 24 broke this one - now both are ok.
cheers
Mark
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lightweight workflows for bioinformatics
john.mccallum (at plantandfood)
MF