Lighthouse has a new layout. Prefer the old one? Return to the old layout, and switch back any time from the link at the top of each page.

Stress-testing continues>>Found another simple issue?????

#34

This "one-liner" used for making tbl format from gff
at
/data/moa/onion/20.genomic.sequencing/09.submission_SSR_reads_sequin wont run in process but fine in CL....{think it might be tilde ~ interpretation???}

cat ../08.submission_SSR_reads/core_SSR_reads | while read marker readname; do echo ">Feature "$readname; awk -v pat=$readname -v mark=$marker '$1~pat {print $4, $5,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}' ../08.submission_SSR_reads/DH2122_skim_seq.fasta.gff ; done > SSR_reads.tbl

////////GIVING////////////// awk: ~pat {print , ,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}
awk: ^ syntax error
awk: ~pat {print , ,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}
awk: ^ syntax error
awk: ~pat {print , ,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}
awk: ^ syntax error
awk: ~pat {print , ,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}
awk: ^ syntax error
awk: ~pat {print , ,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}
awk: ^ syntax error
awk: ~pat {print , ,"repeat_region\t\t\n\t\t\trpt_type\ttandem\n\t\t\tsatellite\tmicrosatellite: "mark"""}
awk: ^ syntax error

Reported by john.mccallum (at plantandfood) · July 4th, 2011 @ 09:25 PM

State: open
Milestone: v1.1
Assigned to: MF MF

Activity

  1. MF
    MF
    • State changed from new to open

    John - is this still a valid concern??

    January 8th, 2012 @ 10:02 PM

  2. John Favors
    John Favors

    Thank you for the information posted about stress-test coding! While learning about the ins and outs of coding, me and my friends have been playing this game called Among Us—you can pretty much learn more about this game from this link. It’s a very challenging game that will test your teamwork and cooperation with one another!

    October 13th, 2020 @ 07:50 AM

Please Sign in or create a free account to add a new ticket.

With your very own profile, you can contribute to projects, track your activity, watch tickets, receive and update tickets through your email and much more.