NCBI Template returns ASN not fasta
Reported by john.mccallum (at plantandfood) | May 10th, 2012 @ 06:13 PM | in v1.1
[cfljam@pgenome 11.download_refseq_nt]$ pwd
/data/moa/db/refseq_cplast/11.download_refseq_nt [cfljam@pgenome
11.download_refseq_nt]$ moa show db L nuccore
jobid L refseq_cplast
query L "Liliopsida"[Organism] AND
(gene_in_plastid_chloroplast[PROP] AND srcdb_refseq[PROP])
title L download chloroplast nt seqs from Refseq
[cfljam@pgenome 11.download_refseq_nt]$ head out.fasta Seq-entry
::= set {
class nuc-prot , descr {
source {
genome chloroplast ,
org {
taxname "Phalaenopsis equestris" ,
db {
{
db "taxon" ,
[cfljam@pgenome 11.download_refseq_nt]$
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lightweight workflows for bioinformatics
john.mccallum (at plantandfood)
MF