MOa cp #$@!#@Boom
Reported by john.mccallum (at plantandfood) | August 27th, 2012 @ 06:39 AM | in v1.1
[cfljam@pgenome 35.FT_reseq_2011]$ pwd
/data/moa/onion/25.resequencing/35.FT_reseq_2011 [cfljam@pgenome
35.FT_reseq_2011]$ moa cp 70.popoolation_Tajima
69.popoolation_Tajima_optimise MOA CRITICAL|12/08/27
18:38:43|moa.job # !! Error loading backend gnumake
ERROR!
Unexpected error
Warning: Encountered a run error?
Traceback (most recent call last):
File "/home/cfljam/opt/moa/bin/moa", line 324, in
run_1()
File "/home/cfljam/opt/moa/bin/moa", line 284, in run_1
run_2()
File "/home/cfljam/opt/moa/bin/moa", line 230, in run_2
run_3(wd)
File "/home/cfljam/opt/moa/bin/moa", line 117, in run_3
job = moa.job.Job(wd)
File "/home/cfljam/opt/moa/lib/python/moa/job.py", line 151, in init
self.loadTemplate()
File "/home/cfljam/opt/moa/lib/python/moa/job.py", line 487, in loadTemplate
self.loadBackend()
File "/home/cfljam/opt/moa/lib/python/moa/job.py", line 508, in loadBackend
locals(), [moduleName], -1)
ImportError: No module named gnumake
Comments and changes to this ticket
-
MF August 27th, 2012 @ 07:30 AM
Wow - are there still jobs that use gnumake?? I deprecated that
probably more than a year ago...I've fixed all jobs that were still gnumake - most of these were
'simple' jobs - so easy to fix. Had to rewrite the sffinfo template.there might still be bugs - so please proceed with some caution
btw - if you want to copy a directory with all subdirectories you should use
moa cp -rcheers
M
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lightweight workflows for bioinformatics
john.mccallum (at plantandfood)
MF