Simple template issue

[cfljam@pgenome 10.Chrom_1]$ pwd /data/moa/onion/map/20.USDA_2012/10.Chrom_1 [cfljam@pgenome 10.Chrom_1]$ moa show jobid l.o Chrom_1
postcommand l.o fastaExtract -l contig_names -f /data/moa/db/onion/80.USDAARS/USOH5Comb_454Isotigs.fasta -t USDA_mapped_contigs_BXA.fasta
precommand l.o awk '/^i/ {print substr($1,2,5)}' BXA_map > contig_nums
process l.M while read LINE ; do grep $LINE /data/moa/db/onion/80.USDAARS/USOH5Comb_454Isotigs.fasta | awk '{print substr($1,2)}' ; done

             contig_nameswhile read LINE ; do grep $LINE /data/moa/db/onion/80.USDAARS/USOH5Comb_454Isotigs.fasta | awk '{print substr($1,2)}' ; done
             <contig_nums > contig_names

title l.o match up SNP map loci to contigs
[cfljam@pgenome 10.Chrom_1]$ moa run Warning: Removing a stale lockfile
/data/moa/onion/map/20.USDA_2012/10.Chrom_1/.moa/tmp/moa.02c91j.sh: line 3: syntax error near unexpected token `(' Error: Exit on error
[cfljam@pgenome 10.Chrom_1]$