Moamoa Moa → v1.1

Comments and changes to this ticket

• 

  john.mccallum (at plantandfood) May 10th, 2011 @ 10:03 PM

  [Cfljam@pgenome 15.NCBI_onion_est_gmapdb]$ moa show Usage: {{bold}}{{green}}%prog {{blue}}[options] COMMAND ARGUMENTS{{reset}}

  Universal Moa commands:
  {{bold}} !{{reset}} : Moa-fy the last (bash) command

                 issued
  

  {{bold}} adhoc{{reset}} : Create an adhoc analysis {{bold}} cp{{reset}} : Copy a moa job {{bold}} list{{reset}} : Print a list of all known

                 templates
  

  {{bold}} map{{reset}} : Create a "map" adhoc analysis {{bold}} new{{reset}} : Create a new Moa job {{bold}} ren{{reset}} : Rename/renumber a job {{bold}} simple{{reset}} : Create a "simple" adhoc analysis {{bold}} tree{{reset}} : display a directory tree {{bold}} unittest{{reset}} : Run Moa unittests {{bold}} version{{reset}} : Print the moa version

  Job specific Moa commands:
  {{bold}} archive{{reset}} : Archive a job, {{bold}} blog{{reset}} : record a short note {{bold}} err{{reset}} : Returns stderr of the last moa run {{bold}} files{{reset}} : Show an overview of the files for

                 this job
  

  {{bold}} help{{reset}} : Display help for a template {{bold}} history{{reset}} : display a version control log {{bold}} kill{{reset}} : Kill a job {{bold}} lock{{reset}} : Lock this job - prevent execution {{bold}} log{{reset}} : Show the logs for this job {{bold}} out{{reset}} : Returns stdout of the last moa run {{bold}} pause{{reset}} : Pause a job {{bold}} refresh{{reset}} : Reload the template {{bold}} resume{{reset}} : Resume a job {{bold}} set{{reset}} : Set, change or remove variables {{bold}} show{{reset}} : Show configured variables {{bold}} status{{reset}} : Show the state of the current job {{bold}} tag{{reset}} : Tag the current version {{bold}} test{{reset}} : Test the currennt configuration {{bold}} unlock{{reset}} : Unlock this job {{bold}} unset{{reset}} : Remove a variable

  input {{bold}}../00.NCBI_onion_nt/nt_out.fasta{{reset}}
  input ../00.NCBI_onion_nt/nt_out.fasta
  name {{bold}}NCBI_onion_nt_gmap{{reset}}
  name NCBI_onion_nt_gmap
  postcommand {{blue}}{{reset}}
  postcommand
  precommand {{blue}}{{reset}}
  precommand
  project {{blue}}{{reset}}
  project
  title {{bold}}gmapdb from NCBI onion ESTs{{reset}}
  title gmapdb from NCBI onion ESTs
  [Cfljam@pgenome 15.NCBI_onion_est_gmapdb]$

• 

  MF May 10th, 2011 @ 10:10 PM

  • State changed from “new” to “resolved”

  Sorry - temp glitch... fixed now..